PH4S019 - Computational and Data-Driven Techniques in the Pharmaceutical Industry 23 Feb 2025 - 31 Aug 2027 | Version 2
Associated Module Information
| Module Code: | PH4S019 | ||
|---|---|---|---|
| Module Title: | Computational and Data-Driven Techniques in the Pharmaceutical Industry | ||
| Faculty: | Faculty of Computing, Engineering and Science | ||
| Faculty Group: | Applied Sciences | ||
| Faculty Sub Group: | Chemistry and Pharmaceutical Science | ||
| Module Leader: | Samuel Jobbins | ||
| Module Team: | Suzanna Kean | ||
| First Intended Intake: | SEP 2024 | Final Year of Intake: | 2024 |
| Date Closed: | |||
| Credit Value: | 20 | Credit Level: | 7 |
| Language: | English | ||
| Percentage of Module Taught in Welsh: | 0 | ||
| Equivalent Module: | |||
| HECOS codes: | 100754 - databases | 100992 - machine learning | 101029 - computational mathematics |
| HECOS Code Weighting: | 34 | 33 | 33 |
Document Version Information
| Version | 2 |
|---|---|
| Valid From | 23 Feb 2025 |
| Valid To | 31 Aug 2027 |
Module Aims
• To develop an awareness of the roles that advanced computing and applied mathematics play in the chemical and pharmaceutical industries;
• To understand core techniques from the fields of data science and machine learning, with an emphasis on those which are applicable to experimental design and analysis in the pharmaceutical sciences;
• To have an awareness of future trends in the field, such as the widespread use of artificial intelligence in drug discovery, molecular modelling and protein structure prediction;
• To provide the practical skills required to confidently interact with such systems.
Content Summary
1) Computer Aided Drug Design (Computational Chemistry)
Following a revision of atomic / molecular orbitals, this topic will:
Introduce the idea of modelling / simulating molecular systems on computers
Introduce different simulation techniques used in computational chemistry (forcefields / semi-empirical descriptions, leading up to density functional theory and QM methods)
Introduce computational chemistry concepts useful in computer aided drug design (including but not necessarily limited to molecular docking, molecular dynamics, structure prediction, screening, enhanced sampling methods etc.)
2) Chemometrics
Following a revision of the underlying mathematical principles this topic will focus on data science and machine learning techniques applicable for use in experimental design and analysis in the pharmaceutical sciences, including but not limited to:
• Data Preprocessing (feature scaling, data transformations, feature encoding etc, with specific emphasis on techniques relevant to the chemical and pharmaceutical industries e.g. Savitzky-Golay filtering)
• Supervised Learning – regression, classification
• Unsupervised Learning – clustering, dimensionality reduction
• Model validation and tuning
• Introduction to Deep Learning – ANNs, CNNs, RNNs, autoencoders (brief, but important for wider context, especially in terms of advanced applications)
3) Artificial Intelligence Applications
This final topic will look at the cutting edge applications of artificial intelligence in the pharmaceutical industry – such topics are expected to include: AI in drug discovery, AI in protein structure prediction (e.g. AlphaFold), AI in molecular simulation, AI in spectra analysis / prediction.
Learning and Teaching Methods
| Activity Type | Hours |
|---|---|
| Lecture | 20 |
| Practical classes and workshops | 10 |
| Independent Study | 80 |
| Directed Study | 80 |
| Problem / challenge based learning | 10 |
| Total Hours Selected | 200 |
Learning Outcomes
| # | Learning Outcome |
|---|---|
| LO1 | Demonstrate a knowledge of industry-relevant computational and mathematical tools and their applications. |
| LO2 | To demonstrate an ability to select and apply appropriate computational and mathematical tools to solve specific problems/address specific challenges in the workplace. |
Module Requisites
N/A
Assessment Criteria
| Assessment Category | Assessment Type | Description | Duration | Word Count | Weight (%) | Best of? | Pass Mark |
|---|---|---|---|---|---|---|---|
| Asynchronous Assessment | Practical Written Work 2 | Completion of chemometrics task, utilising data science and ML tools | 0 | 3000 | 60 | No | 40 |
| Asynchronous Assessment | Practical Written Work 1 | Completion of tasks on WebMO and associated write-up | 0 | 2000 | 40 | No | 40 |
Assessment Matrix
| Assessment Type | Learning Outcomes | ||
|---|---|---|---|
| LO1 | LO2 | ||
| Practical Written Work 2 | ✔ | ✔ | |
| Practical Written Work 1 | ✔ | ✔ | |