PH1S085 - Organic Molecules: their Structure, Reactivity and Analysis 01 Aug 2023 - 31 Aug 2029 | Version 1

Associated Module Information

Module Code: PH1S085
Module Title: Organic Molecules: their Structure, Reactivity and Analysis
Faculty: Faculty of Computing, Engineering and Science
Faculty Group: Applied Sciences
Faculty Sub Group: Chemistry and Pharmaceutical Science
Module Leader: Suzanna Kean
Module Team: Andrew Graham, Rehana Karim
First Intended Intake: SEP 2028 Final Year of Intake: 2028
Date Closed:
Credit Value: 20 Credit Level: 4
Language: English
Percentage of Module Taught in Welsh: 0
Equivalent Module:
HECOS codes: 100413 - analytical chemistry 100422 - organic chemistry
HECOS Code Weighting: 20 80

Document Version Information

Version 1
Valid From 01 Aug 2023
Valid To 31 Aug 2029

Module Aims

1. To introduce the scope and special features of fundamental organic chemistry.

2. To introduce techniques of organic/spectroscopic analysis and apply relevant data to problem solving in organic chemistry

3. To illustrate concepts in the laboratory and to impart relevant practical skills

Content Summary

This module is designed to develop and support the students application of fundamental concepts in the areas of organic and analytical chemistry. Students will study the following:

1) Understanding organic molecules:

Recognising bonding within organic molecules (valency, hybridization, bonding orbital theory (sigma/pi bonds))

Using names and drawing structures to communicate about molecules (functional group recognition, concept of homologous series, nomenclature of organic compounds, drawing/representing organic compounds: molecular formula, condensed formula, full displayed structural formula, line diagrams).

The complexity of organic structures (structural isomers: positional, functional group and chain isomers. Stereoisomers: geometric and optical isomers (assigning/naming both E/Z and cis/trans for geometric isomers and R/S for optical isomers up to two chiral centres), their properties, how to draw, concept of diastereomers and meso compounds. Conformers of alkanes: importance in some reactions, Newman projects of different conformers, concept of steric hinderance).

How do organic molecules react/interact (Intermolecular forces: types and how they govern the physical properties of organic compounds. Fundamental reactions in organic chemistry: bond polarity, bond breakage/formation (homolysis, heterolysis), type of reagents (electrophiles/nucleophiles/radical), types of reactions (addition/elimination/substitution/rearrangement). Fundamental mechanisms in organic chemistry: non-polar (radical addition/substitution, chain reactions, the stability of radical species), polar (electrophilic addition reactions: importance of stability of carbocations in determining product, Markovnikov’s rule; SN1/SN2: factors affecting, e.g., solvent nucleophile, leaving group, steric factors; E1/E2: factors that govern choice of).

2) Organic Transformations

The properties and reactions of some fundamental organic compounds including characteristic chemical tests for: the alkanes, alkenes, halogenoalkanes and alcohols, an introduction to the carbonyl containing compounds (aldehydes/ketones/carboxylic acids/carboxylic acid derivatives) and the amines, nitriles and amides. Multistep reactions that interconvert between these functional groups.

Aromatic compounds: The special case of benzene, conjugation and resonance, introduction to aromaticity (Huckels rule), naming benzene compounds, electrophillic aromatic substitution reactions, substituent effects (directing/activating effects of electron withdrawing or electron donating groups), nucleophilic aromatic substitution, specific aromatic compounds and their reactions: halogenated aromatic compounds, phenols, phenyl amine, akylbenzenes

3) Fundamental Organic Analysis

Elemental analysis, determination of double bond equivalency, UV-Vis spectroscopy (basic principles and interpretation of spectra), IR analysis (basic principles and interpretation of spectra primarily to identify characteristic functional groups), 1H and 13C NMR (basic principles and interpretation of spectra (number of signals/chemical shift/integration/splitting patterns) to elucidate full structures), mass spectrometry (basic principles and interpretation of spectra primarily for mass determination and fragment identification, introduction to concept of rearrangements of fragments). Multispectral analysis.

4) Fundamental laboratory skills

Extraction techniques e.g., liquid/liquid extraction, chromatography (e.g., thin layer chromatography), purification techniques e.g., recrystallisation, methods of analysis (e.g., chromatography, melting points), relevant data analysis and calculations. Safe laboratory practices.

Learning and Teaching Methods

Activity Type Hours
Lecture 18
Practical classes and workshops 12
Independent Study 50
Directed Study 102
Problem / challenge based learning 18
Total Hours Selected 200

Learning Outcomes

# Learning Outcome
LO1 Acquire and apply the basic concepts that underpin organic chemistry including structures, shapes, physical interactions, reaction mechanisms, and analysis.
LO2 Evaluate scientific data and develop practical skills to solve problems.

Module Requisites

Code Title Requisite Type
MOD013086 Foundations in Physical Chemistry pre-requisite
MOD013095 Foundations in Organic and Inorganic Chemistry pre-requisite
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Assessment Criteria

Assessment Category Assessment Type Description Duration Word Count Weight (%) Best of? Pass Mark
Synchronous Onsite Practical Assessment Practical Coursework (Onsite) 1 A series of guided assessments demonstrating the application of practical skills and problem solving 0 2000 50 No 40
Asynchronous Assessment Report 1 Written assignment allowing demonstration of the taught theory of the module. 0 N/A 50 No 40

Assessment Matrix

Assessment Type Learning Outcomes
LO1 LO2
Practical Coursework (Onsite) 1
Report 1

Reading List

John E McMurray “Organic Chemistry” (9th Edition) 2015